Dersin Bilgileri

Dersin Adı	Türkçe	Biyolojik Sistemlerde Modelleme
	İngilizce	Modelling in Biological System
Dersin Kodu	BIO 441E	Kredi	Ders (saat/hafta)	Uygulama (saat/hafta)	Labratuvar (saat/hafta)
Dönem	-	3	3	-	-
Dersin Dili		İngilizce
Dersin Koordinatörü		Bülent Balta
Dersin Amaçları		1 - To teach the basics of the quantum mechanics and molecular mechanics methods 2 - To model the structures and reactions of small molecules of biological importance using quantum methods 3 - To study the structures and dynamics of biological macromolecules using molecular dynamics simulations
Dersin Tanımı		Basic concepts of quantum mechanics; application of quantum mechanics to molecular systems (semi empirical, ab initio, DFT methods); molecular mechanics methods, molecular dynamics simulations, Monte Carlo simulation, conformational analysis, calculation of the geometries and energies of stable molecules and transition structures
Dersin Çıktıları		1 - Various geometry optimization algorithms 2 - Basics of the quantum mechanics 3 - Semi empirical, ab initio, DFT methods 4 - Calculation of the structures, reaction energies, activation energies in molecular systems 5 - Calculation of the molecular properties such as IR frequencies and charge distributions 6 - Basics of molecular mechanics methods 7 - Studying conformational behaviors of proteins using molecular dynamics simulations 8 - Monte Carlo simulations
Önkoşullar		BIO 341 MIN DD veya BIO 341E MIN DD
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